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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041288
species: Populus trichocarpa
miRNA family: MIR156
source: miRBase, original name: ptc-MIR156a (MI0002184)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACATCTCTTCTGTCAGC

mismatches: 0
bulges: 1

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pre-miRNA
AAAGAAAGACTGACAGAAGAGAGTGAGCACACACGAAAGTATATGGTATGAAGGCATTCCATTGCAGGGTGTGTGCTCACATCTCTTCTGTCAGCTTCCA
C


dot-bracket secondary structure
...(.(((.(((((((((((((((((((((((((....(((.((((.(((....))).)))))))...)))))))))))).)))))))))))))))).).
.



SIMILARITIES
miRBase ptc-MIR156f: 3e-32

PMRD ptc-miR156a: 1e-52

microPC miR156: 0.0000003
UniProt no hits

RFAM mir-156: 9e-42

Identical with: ptc-miRf10104-akr from PMRD (MNEST051926)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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